singularity recipe

Bootstrap: docker
From: continuumio/anaconda3:latest

%environment
    export PATH="/opt/conda/bin:$PATH"

%post
    # Installation de pip
    conda install -y -c anaconda pip

    # Installation de la librairie CTAplot avec pip
    pip install ctaplot

    # Création du répertoire .jupyter
    mkdir /root/.jupyter

    # Création du fichier de configuration de Jupyter Lab
    touch /root/.jupyter/jupyter_notebook_config.py

    # Configuration de Jupyter Lab
    echo "c.NotebookApp.ip = '0.0.0.0'" >> /root/.jupyter/jupyter_notebook_config.py
    echo "c.NotebookApp.open_browser = False" >> /root/.jupyter/jupyter_notebook_config.py
    echo "c.NotebookApp.port = 8888" >> /root/.jupyter/jupyter_notebook_config.py

    # Exposition du port de Jupyter Lab
    export PORT=8888
    echo "export PORT=8888" >> /root/.bashrc

    # Modification des permissions du répertoire .jupyter
    chmod -R 777 /root/.jupyter

%runscript
    jupyter lab --allow-root --port $PORT --no-browser

2. Building the image

singularity build jup.sif jup.def

3. Executing the container

singularity exec --bind $PWD:/run/user jup.sif jupyter-lab --no-browser --ip=127.0.0.1 --NotebookApp.token=''

4. S’y connecter depuis son laptop

Dans un autre terminal

ssh -L 8888:127.0.0.1:8888 username@lappusmb.in2p3.fr